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GST Audit Services

May 22, 2025 by Team Instabizfilings

GST Audit Services

What is a GST Audit?

 

A GST audit involves the examination of a registered taxpayer’s financial records to verify the accuracy of reported turnover, tax payments, input tax credit (ITC) claims, and refund applications under GST laws. 

 

The GST audit is a critical compliance measure to ensure transparency in tax reporting, whether conducted by the tax authorities or a Chartered/Cost Accountant appointed by the taxpayer.

 

Why are GST Audit Services Important?

 

  • Legal Compliance: Tax audits exist under GST laws to satisfy specific compliance requirements. Failure to meet legal requirements for audits will result in both fees and various legal repercussions.

  • Error Identification: Audits enable organisations to detect inconsistencies in their tax reporting and financial documentation allowing them to resolve problems in advance.

  • Avoid Penalties: Inaccurate GST return filing and improper Input Tax Credit (ITC) claims can result in penalties and interest. GST audits help organizations mitigate these potential risks..

  • Internal Control: Audits help organizations detect their internal process weak points and strengthen financial systems combined with better GST compliance practices.

 

Types of GST Audits

 

1. Registered Taxpayer’s CA/ Cost Accountant conducts Turnover-Based Audit

 

  • Applicable when the aggregate turnover exceeds the prescribed limit in a financial year (limit revised or removed in various states post-2021, but the concept is still useful for internal audits).

  • Taxpayers must obtain an audit from a Chartered Accountant or Cost Accountant whom they have selected.

  • Requires submission of:

  1. Audited financial statements
  2. Reconciliation statement (GSTR-9C)
  3. Certification by the auditor

 

2. Departmental GST Audit (By Tax Authorities)

 

  • Inspections under GST are conducted by officers authorized by the Commissioner.

  • Issued via notice in Form GST ADT-01.

  • Focuses on examining the accuracy of returns, tax payments, and ITC.

 

3. Special Audit (Under Section 66 of CGST Act)

 

  • Changes must receive approval from the Commissioner before obtaining the Assistant Commissioner's authorisation.

  • Applicable when there is a complexity in transactions or discrepancies found during scrutiny.

  • A nominated Chartered Accountant or Cost Accountant performs this assessment.

 

Scope of GST Audit Services

 

Professional GST audit service providers typically offer the following services:

 

  • Financial and Return Reconciliation
  1. Reconcile the data reported in GSTR-1, GSTR-3B, GSTR-9, and GSTR-9C with the books of accounts.

  2. The systems must display exact matching between tax obligations and input tax credits.

  • Review of ITC Claims
  1. Validate the Input Tax Credit claimed.

  2. Ensure credit has been claimed only on eligible inputs and services.

  3. Verify matching with GSTR-2A/2B.

  • Compliance Review
  1. Assess the taxpayer’s compliance with invoicing, HSN/SAC codes, e-way bills, and return filing deadlines.

  2. Identify areas of non-compliance or misclassification.

  • Verification of Tax Payments
  1. Check the accuracy and timeliness of GST payments.

  2. Review tax computations and outward liability reporting.

  • Review of Refunds & Reverse Charge Mechanism
  1. An examination of GST refund claims must be performed to verify adherence to established conditions.

  2. Evaluate the applicability and treatment of reverse charge mechanism (RCM) transactions.

  • Audit Report and Certification
  1. Prepare and submit Form GSTR-9C (if applicable).

  2. Provide an audit report with observations and recommendations.

  • Advisory and Representation
  1. Offer guidance on corrections, filing revised returns, and improving compliance.

  2. Represent clients before tax authorities in case of audit queries or notices.

 

Documents Required for GST Audit

 

  • GST returns: GSTR-1, GSTR-3B, GSTR-9, and GSTR-9C

  • Trial balance and financial statements

  • Sales and purchase registers

  • E-way bill records

  • Input tax credit ledger

  • Tax payment challans

  • Reconciliation statements

  • Agreements and contracts for services or supplies

 

Process of GST Audit Services

 

  • Engagement and Planning

  1. Understand the client's GST framework and business model.
  2. Define the scope and period of the audit.
  • Data Collection and Verification

  1. Gather all relevant GST returns, accounting data, and supporting records.
  2. Validate the accuracy and completeness of financial inputs.
  • Reconciliation and Analysis

  1. Reconcile financials with returns.
  2. Analyse mismatches and tax liabilities.
  • Risk Assessment

  1. Locate areas which show potential hazards or threaten exposure.
  2. High-risk business transactions, along with analyses of potential Tax Incentive Credit misuse.
  • Report Preparation

  1. Prepare the GST audit report by including findings within it.
  2. Submit recommendations regarding needed changes to the documentation.
  • Filing and Certification

  1. File GSTR-9C (if applicable).
  2. Add GSTR-9C certifications with formal audit paperwork for submission.

 

Benefits of Professional GST Audit Services

 

  • Accuracy: The system preserves data integrity both within GST returns and financial books.

  • Risk Mitigation: GST audit services reduce the likelihood of tax notices, fines, and penalties.

  • Strategic Advice: Gain practical tax suggestions and operational process enhancement recommendations.

  • Regulatory Confidence: Your organisation will have better readiness to face departmental reviews or audit procedures.

  • Operational Efficiency: The system allows users to identify process difficulties and control system failures for resolution.

 

Common Issues Found During GST Audits

 

  • Mismatches between GSTR-3B and GSTR-1

  • Ineligible ITC claims (blocked credits, time-barred claims)

  • Errors in tax classification (wrong HSN/SAC codes)

  • Missing invoices or e-way bill violations

  • Incorrect treatment of interstate vs. intrastate supplies

  • Delays in filing returns and payments

 

Conclusion

 

GST Audit Services serve both compliance purposes and function as important tools to maintain strong financial health while upholding tax compliance throughout organisations. A company's successful operation depends heavily on professional assistance for regular GST law audits because updates frequently occur, while non-compliance faces severe consequences. A trustworthy GST audit service provider verifies your GST data while helping you build stronger internal processes to manage risks and improve your state of mind.

 

Disclaimer

 

The information provided in this blog is purely for general informational purposes only. While every effort has been made to ensure the accuracy, reliability and completeness of the content presented, we make no representations or warranties of any kind, express or implied, for the same. 

 

We expressly disclaim any and all liability for any loss, damage or injury arising from or in connection with the use of or reliance on this information. This includes, but is not limited to, any direct, indirect, incidental, consequential or punitive damage.


Further, we reserve the right to make changes to the content at any time without prior notice. For specific advice tailored to your situation, we request you to get in touch with us.


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